Round5 精度改善レポート(短い略語)

round4 の短い no_match 略語を対象に、fullname 既知+文献確認済みの選択的 abbrev / alias ルールを追加した結果です。比較: baselineround5_abbrev (判定は Flash×3 固定。エンジン v0.8.5)。

サマリー

no_match
187
baseline 663 → -476 / baseline 663
aligned
1454
baseline 1139 → +315 / baseline 1139
wrong
563
baseline 692 → -129 / baseline 692
baseline→r5 改善/悪化
692 / 44
baseline→r5: 692 / 44

全体ラベル(baseline → round5_abbrev)

labelbaselineround5_abbrevΔ
aligned11391454+315
broader_parent689969+280
partial_or_narrower243256+13
wrong692563-129
ambiguous86-2
source_or_ontology_issue12120
no_consensus1211-1
no_match663187-476

abbrev のみ

labelbaselineround5_abbrevΔ
aligned7201019+299
broader_parent335594+259
partial_or_narrower163180+17
wrong476378-98
ambiguous75-2
source_or_ontology_issue63-3
no_consensus59+4
no_match656180-476

Round5 で入れた変更

  1. 選択的 abbrev ルール — Thal/PreS/PeRh/vHipp/dcHPC/PH/SOA/SNpc/ARN/PaF など、fullname または文献で用法が明確な短い略語を追加(~130 件)。
  2. abbrev-only 文献確認 — PiCo→IRt、mZI→ZI、IntA→InPl、PPRF→pontine RF、DAO→IO など。
  3. alias 補強 — posterior hypothalamus→PHN、VLPO→LPA、SOA area→Su3、dorsal horn→spinal horn parent など展開後の解決を保証。
  4. やらないこと — CINs/PoSp/organoid/marker 融合などオントロジー外・細胞種のみはスキップ。曖昧な 2 文字 RF 等は未追加。

代表例(round4 → round5)

queryround4round5
Thalno_match
(no_match)
aligned
thalamus
PreSno_match
(no_match)
aligned
presubiculum (presubicular cortex)
PeRhno_match
(no_match)
partial_or_narrower
perirhinal cortex (area 35)
vHippno_match
(no_match)
broader_parent
hippocampus
dcHPCno_match
(no_match)
broader_parent
hippocampus
PHno_match
(no_match)
partial_or_narrower
posterior hypothalamic nucleus
SOAno_match
(no_match)
partial_or_narrower
supraoculomotor nucleus
SNpcno_match
(no_match)
aligned
substantia nigra, compact division
PiCono_match
(no_match)
broader_parent
intermediate reticular nucleus
mZIno_match
(no_match)
broader_parent
zona incerta
IntAno_match
(no_match)
aligned
lateral interpositus (emboliform) nucleus
PPRFno_match
(no_match)
broader_parent
Pontine reticular formation
DAOno_match
(no_match)
broader_parent
inferior olive
ARNno_match
(no_match)
aligned
arcuate nucleus of hypothalamus
PaFno_match
(no_match)
aligned
parafascicular nucleus of thalamus
VLPOno_match
(no_match)
broader_parent
lateral preoptic area
DHno_match
(no_match)
aligned
dorsal column (horn) of spinal cord
ADnno_match
(no_match)
aligned
anterodorsal nucleus of thalamus
HPno_match
(no_match)
aligned
hippocampus
MCPOno_match
(no_match)
broader_parent
lateral preoptic area
CPrno_match
(no_match)
broader_parent
dorsal striatum (caudoputamen complex-CP, STRd)
BNCno_match
(no_match)
aligned
basolateral nuclear group of amygdala
SGIno_match
(no_match)
aligned
intermediate gray layer of superior colliculus

改善例(692)

kindquerybeforeafter
fullnameparaventricular nucleuswrong
paraventricular nucleus of thalamus
aligned
paraventricular nucleus of hypothalamus
fullnamenucleus tractus solitariuswrong
parasolitary nucleus
aligned
solitary nucleus
abbrevLHno_match
(no_match)
partial_or_narrower
accessory secretory cells of lateral hypothalamus
abbrevVPwrong
ventral posterior visual area (ventral third visual are
aligned
ventral pallidum
abbrevDMSwrong
dorsal migratory stream
broader_parent
striatum (neostriatum)
abbrevdLGNno_match
(no_match)
aligned
lateral geniculate nucleus (dorsal lateral geniculate n
abbrevTRNno_match
(no_match)
aligned
reticular nucleus of thalamus
abbrevLHbno_match
(no_match)
aligned
lateral habenular nucleus
abbrevDCNno_match
(no_match)
aligned
dorsal cochlear nucleus
abbrevLSno_match
(no_match)
aligned
lateral septal nuclear complex
abbrevDLSwrong
(dorso)lateral sulcus
broader_parent
striatum (neostriatum)
abbrevLHAno_match
(no_match)
partial_or_narrower
lateral hypothalamic area, tuberal part
abbrevVLPAGno_match
(no_match)
aligned
periaqueductal gray substance, ventrolateral division
abbrevLGNno_match
(no_match)
aligned
lateral geniculate nucleus (dorsal lateral geniculate n
abbrevPPNwrong
parietopontine fibers
aligned
pedunculo(pontine) tegmental nucleus
abbrevPOmno_match
(no_match)
wrong
periventricular area of posterior thalamus
abbrevvHPCno_match
(no_match)
broader_parent
hippocampus
abbrevSubno_match
(no_match)
aligned
subiculum proper (strictly defined subiculum)
abbrevMGBno_match
(no_match)
aligned
medial geniculate nuclear complex
abbrevPBNno_match
(no_match)
aligned
parabrachial nuclei
abbrevHDBno_match
(no_match)
aligned
horizontal division of nucleus of diagonal band
abbrevCNwrong
cerebral nuclei
aligned
cerebellar deep nuclei
abbrevMECwrong
caudal medial nucleus
aligned
medial (caudal) entorhinal cortex
abbrevvCA1no_match
(no_match)
aligned
rostral (ventral) division of CA1
abbrevMVNno_match
(no_match)
aligned
medial vestibular nucleus

悪化例(44)

kindquerybeforeafter
fullnamedorsal raphe nucleusaligned
dorsal raphe nucleus
partial_or_narrower
dorsal raphe nucleus, dorsal division
abbrevSp5aligned
spinal trigeminal nucleus
wrong
spinal trigeminal tract
abbrevdorsal raphe nucleusaligned
dorsal raphe nucleus
partial_or_narrower
dorsal raphe nucleus, dorsal division
abbrevMe5aligned
mesencephalic trigeminal nucleus
wrong
mesencephalic trigeminal tract
abbrevNA corealigned
core of nucleus accumbens
partial_or_narrower
lateral subdivision of the core
abbrevOTaligned
olfactory tubercle
wrong
optic tract
abbrevbasal nucleus of the amygdalaaligned
basolateral nucleus (basal nucleus) of amygdala
wrong
basal nucleus of Meynert
fullnameventral lateral ventral posterior medial thalamic nucleusbroader_parent
ventral posterior nuclear complex of thalamus
wrong
ventral lateral nucleus of thalamus
fullnamelamina II of the dorsal hornaligned
lamina II of spinal cord
broader_parent
dorsal column (horn) of spinal cord
abbrevmatrix thalamusbroader_parent
thalamus
wrong
ventricular (matrix, germinal) zone of spinal cord
abbrevmedial parabrachial nucleusaligned
medial parabrachial nucleus
partial_or_narrower
medial parabrachial nucleus, medial division
fullnamemedial parabrachial nucleusaligned
medial parabrachial nucleus
partial_or_narrower
medial parabrachial nucleus, medial division
abbrevNAc medial shellaligned
medial subdivision of the shell
broader_parent
shell of nucleus accumbens
abbrevsimple lobulealigned
lobule VI (simple lobule)
partial_or_narrower
lobule VIA (simple lobule, rostral part)
abbrevBLA INbroader_parent
basolateral nuclear group of amygdala
wrong
intermediate division of lateral nucleus
abbrevBLA.acbroader_parent
basolateral nuclear group of amygdala
wrong
anterior commissure
abbrevBLA.albroader_parent
basolateral nuclear group of amygdala
wrong
ansa lenticularis
abbrevBLA.ambroader_parent
basolateral nuclear group of amygdala
wrong
anteromedial nucleus of thalamus
abbrevCA1-3broader_parent
hippocampal proper (Cornu Ammonis)
partial_or_narrower
CA1 region of hippocampus
abbrevcervical spinal cord (C6)broader_parent
cervical spinal cord
partial_or_narrower
lamina VI of cervical spinal cord
abbrevcontra-DMSaligned
dorsal migratory stream
broader_parent
striatum (neostriatum)
fullnamenucleus reticularis tegmenti pontisaligned
reticulotegmental nucleus
wrong
pedunculo(pontine) tegmental nucleus
abbrevcontralateral PNbroader_parent
pons
wrong
pontine nucleus
abbrevdistal CA1broader_parent
hippocampal proper (Cornu Ammonis)
wrong
body part of CA1
fullnameinterfasicular nucleuswrong
medullary reticular nucleus, dorsal division (ventral r
source_or_ontology_issue
epifascicular nucleus

baseline からの通算

no_match 663 → 187 (-476)、 aligned 1139 → 1454、 wrong 692 → 563。 useful ≈ aligned+broader: 1828 → 2423。