サマリー
no_match
324
r3 344 → -20
/ baseline 663
aligned
1372
r3 1338 → +34
/ baseline 1139
wrong
584
r3 642 → -58
/ baseline 692
r3→r4 改善/悪化
111 / 34
baseline→r4: 517 / 46
全体ラベル（round3 → round4）
| label | round3 | round4 | Δ |
|---|---|---|---|
| aligned | 1338 | 1372 | +34 |
| broader_parent | 860 | 898 | +38 |
| partial_or_narrower | 243 | 248 | +5 |
| wrong | 642 | 584 | -58 |
| ambiguous | 8 | 6 | -2 |
| source_or_ontology_issue | 13 | 12 | -1 |
| no_consensus | 10 | 14 | +4 |
| no_match | 344 | 324 | -20 |
abbrev のみ
| label | round3 | round4 | Δ |
|---|---|---|---|
| aligned | 913 | 940 | +27 |
| broader_parent | 504 | 537 | +33 |
| partial_or_narrower | 165 | 169 | +4 |
| wrong | 430 | 385 | -45 |
| ambiguous | 7 | 5 | -2 |
| source_or_ontology_issue | 6 | 3 | -3 |
| no_consensus | 7 | 12 | +5 |
| no_match | 336 | 317 | -19 |
Round4 で入れた変更（engine 0.8.4）
- P1 衝突 demotion 強化 —
area THを primary embed から除外。soft demotion を acronym 衝突＋複合句内の裸略語残りに拡大。展開パスは content overlap 必須。 - P1 cell-type / marker strip —
BLA Ppp1r1b、CeA-CRF、MDTGlut、NAc-S D1-SPNsなどから分子タグを剥がして ROI 検索。 - P1 高信頼衝突ルール追加 — CP/Acb/dSC/pTh/CUN/PCx/OP/ANT/… などコーパス fullname と整合する文献展開を追加。
- P2 fullname 曖昧性 — bare
paraventricular nucleus/arcuate nucleusを視床下部へ（alias）。 - P2 複合句 — 2文字略語の安全なインライン展開（caudal CP）、exact 同点時は name–query Jaccard でタイブレーク（basal nucleus → Meynert）。
- やらないこと — HOMBA acronym 削除なし。オントロジーに無い区画への偽 exact なし。デプロイは未実施。
代表例（round3 → round4）
| query | round3 | round4 |
|---|---|---|
TH | wrong medial division of PHC (area TH) | aligned thalamus |
DLS | wrong (dorso)lateral sulcus | broader_parent striatum (neostriatum) |
CN | wrong cerebral nuclei | aligned cerebellar deep nuclei |
CP | wrong cortical plate of neocortex | aligned dorsal striatum (caudoputamen complex-CP, STRd) |
Acb | wrong anterior lobe of cerebellar cortex | aligned nucleus accumbens |
dSC | wrong dorsal spinocerebellar tract | partial_or_narrower deep gray layer of superior colliculus |
pTh | wrong pallidothalamic tract | aligned ventral thalamus |
CeM | wrong central medial nucleus of thalamus | aligned medial division of central nucleus |
BN | wrong basal ganglia (basal nuclei) | aligned Barrington's nucleus |
CUN | wrong cuneus (gyrus) | aligned cuneiform nucleus |
contralateral MEC | wrong caudal medial nucleus | aligned medial (caudal) entorhinal cortex |
BLA Ppp1r1b | no_match (no_match) | broader_parent basolateral nuclear group of amygdala |
CeA-CRF | no_match (no_match) | broader_parent central nucleus of amygdala |
MDTGlut | no_match (no_match) | broader_parent mediodorsal nucleus of thalamus |
paraventricular nucleus | ambiguous paraventricular nucleus of thalamus | aligned paraventricular nucleus of hypothalamus |
arcuate nucleus | ambiguous arcuate nucleus of medulla oblongata | aligned arcuate nucleus of hypothalamus |
caudal CP | wrong tail part of CA1 | partial_or_narrower caudal ventral domain of the striatum |
basal nucleus | wrong basal ganglia (basal nuclei) | aligned basal nucleus of Meynert |
VP | aligned ventral pallidum | aligned ventral pallidum |
CA1 | aligned CA1 region of hippocampus | aligned CA1 region of hippocampus |
改善例（111）
| kind | query | before | after |
|---|---|---|---|
| fullname | paraventricular nucleus | wrong paraventricular nucleus of thalamus | aligned paraventricular nucleus of hypothalamus |
| abbrev | DLS | wrong (dorso)lateral sulcus | broader_parent striatum (neostriatum) |
| abbrev | CN | wrong cerebral nuclei | aligned cerebellar deep nuclei |
| abbrev | CPu | partial_or_narrower caudate-putamen cell bridges | aligned dorsal striatum (caudoputamen complex-CP, STRd) |
| fullname | caudate putamen | partial_or_narrower caudate-putamen cell bridges | aligned dorsal striatum (caudoputamen complex-CP, STRd) |
| fullname | arcuate nucleus | wrong arcuate nucleus of medulla oblongata | aligned arcuate nucleus of hypothalamus |
| abbrev | CP | wrong cortical plate of neocortex | aligned dorsal striatum (caudoputamen complex-CP, STRd) |
| abbrev | ANT | wrong angular nucleus of thalamus | aligned anterior nuclear complex of thalamus |
| abbrev | TH | wrong medial division of PHC (area TH) | aligned thalamus |
| abbrev | PuI | no_match (no_match) | broader_parent pulvinar of thalamus |
| abbrev | spinal interneurons | wrong lamina IX of spinal cord (spinal motor neurons) | broader_parent spinal cord |
| abbrev | MDTGlut | no_match (no_match) | broader_parent mediodorsal nucleus of thalamus |
| abbrev | Acb | wrong anterior lobe of cerebellar cortex | aligned nucleus accumbens |
| abbrev | CeM | wrong central medial nucleus of thalamus | aligned medial division of central nucleus |
| abbrev | MR | wrong marginal ramus of cingulate sulcus | aligned median raphe nucleus |
| abbrev | caudal CP | wrong tail part of CA1 | partial_or_narrower caudal ventral domain of the striatum |
| fullname | caudal caudate putamen | wrong caudate-putamen cell bridges | partial_or_narrower caudal ventral domain of the striatum |
| abbrev | ipsi-TH | source_or_ontology_issue medial division of PHC (area TH) | broader_parent thalamus |
| abbrev | prethalamus | wrong epithalamus | aligned ventral thalamus |
| abbrev | PPT | no_match (no_match) | aligned pedunculo(pontine) tegmental nucleus |
悪化例（34）
| kind | query | before | after |
|---|---|---|---|
| fullname | dorsal raphe nucleus | aligned dorsal raphe nucleus | partial_or_narrower dorsal raphe nucleus, dorsal division |
| abbrev | Sp5 | aligned spinal trigeminal nucleus | wrong spinal trigeminal tract |
| abbrev | dorsal raphe nucleus | aligned dorsal raphe nucleus | partial_or_narrower dorsal raphe nucleus, dorsal division |
| abbrev | Me5 | aligned mesencephalic trigeminal nucleus | wrong mesencephalic trigeminal tract |
| abbrev | NA core | aligned core of nucleus accumbens | partial_or_narrower lateral subdivision of the core |
| abbrev | OT | aligned olfactory tubercle | wrong optic tract |
| abbrev | basal nucleus of the amygdala | aligned basolateral nucleus (basal nucleus) of amygdala | wrong basal nucleus of Meynert |
| fullname | neuropeptide Y promoter-expressing spinal dorsal horn inhibitory interneurons | broader_parent dorsal column (horn) of spinal cord | partial_or_narrower dorsal horn of coccygeal spinal cord |
| abbrev | matrix thalamus | broader_parent thalamus | wrong ventricular (matrix, germinal) zone of spinal cord |
| abbrev | medial parabrachial nucleus | aligned medial parabrachial nucleus | partial_or_narrower medial parabrachial nucleus, medial division |
| fullname | medial parabrachial nucleus | aligned medial parabrachial nucleus | partial_or_narrower medial parabrachial nucleus, medial division |
| abbrev | NAc medial shell | aligned medial subdivision of the shell | broader_parent shell of nucleus accumbens |
| abbrev | simple lobule | aligned lobule VI (simple lobule) | partial_or_narrower lobule VIA (simple lobule, rostral part) |
| abbrev | VTA PBP | aligned parabrachial pigmented nucleus | broader_parent ventral tegmental area |
| abbrev | cervical spinal cord (C6) | broader_parent cervical spinal cord | partial_or_narrower lamina VI of cervical spinal cord |
| abbrev | contralateral PN | broader_parent pons | wrong pontine nucleus |
| abbrev | dorsal horn (TL) | partial_or_narrower dorsal horn of lumbar spinal cord | wrong dorsal horn of sacral spinal cord |
| fullname | dorsal horn (thoracolumbar) | partial_or_narrower dorsal horn of lumbar spinal cord | wrong dorsal horn of sacral spinal cord |
| abbrev | gemini nucleus | wrong abducens nucleus | no_consensus paratrigeminal nucleus |
| fullname | interfasicular nucleus | wrong anteroventral periventricular nucleus | source_or_ontology_issue epifascicular nucleus |
baseline からの通算
no_match 663 → 324 （-339）、 aligned 1139 → 1372、 wrong 692 → 584。 useful ≈ aligned+broader: 1828 → 2270。